We apologize for a recent technical issue with our email system, which temporarily affected account activations. Accounts have now been activated. Authors may proceed with paper submissions. PhDFocusTM
CFP last date
20 December 2024
Reseach Article

Protein Databank Filtering and Amino Acid Frequency Calculator (PFA2FC): A Tool

by Ranjana Dhuppar, Gurpreet Singh Bhamra
International Journal of Computer Applications
Foundation of Computer Science (FCS), NY, USA
Volume 98 - Number 10
Year of Publication: 2014
Authors: Ranjana Dhuppar, Gurpreet Singh Bhamra
10.5120/17216-7446

Ranjana Dhuppar, Gurpreet Singh Bhamra . Protein Databank Filtering and Amino Acid Frequency Calculator (PFA2FC): A Tool. International Journal of Computer Applications. 98, 10 ( July 2014), 1-3. DOI=10.5120/17216-7446

@article{ 10.5120/17216-7446,
author = { Ranjana Dhuppar, Gurpreet Singh Bhamra },
title = { Protein Databank Filtering and Amino Acid Frequency Calculator (PFA2FC): A Tool },
journal = { International Journal of Computer Applications },
issue_date = { July 2014 },
volume = { 98 },
number = { 10 },
month = { July },
year = { 2014 },
issn = { 0975-8887 },
pages = { 1-3 },
numpages = {9},
url = { https://ijcaonline.org/archives/volume98/number10/17216-7446/ },
doi = { 10.5120/17216-7446 },
publisher = {Foundation of Computer Science (FCS), NY, USA},
address = {New York, USA}
}
%0 Journal Article
%1 2024-02-06T22:25:49.162694+05:30
%A Ranjana Dhuppar
%A Gurpreet Singh Bhamra
%T Protein Databank Filtering and Amino Acid Frequency Calculator (PFA2FC): A Tool
%J International Journal of Computer Applications
%@ 0975-8887
%V 98
%N 10
%P 1-3
%D 2014
%I Foundation of Computer Science (FCS), NY, USA
Abstract

Data Mining is the process of automatic extraction of useful patterns in the form of knowledge from the huge databases. Bioinformatics or computational molecular biology deals with the design and use of computer software to solve the complex biological problem. Proteins are important constituents of cellular machinery of any living organism and the functioning of proteins heavily depends upon its amino acids. A tool called Protein databank Filtering and Amino Acid Frequency Calculator (PFA2FC) has been designed using Java language to mine the Protein databank and find the frequencies of each amino acid within a protein.

References
  1. T. Attwood and D. Parry-Smith. Introduction to Bioinformatics. Prentice Hall, First edition, March 1999.
  2. J. M. Claverie. From bioinformatics to computational biology. Genome Research, 10(9):1277–1279, 2000.
  3. Arthur M. Lesk. Introduction to Bioinformatics. Oxford University Press, Fourth edition, February 2014.
  4. Loredana Lo Conte, Steven E. Brenner, Tim J. P. Hubbord, Cyrus Ghothia, and Alexey G. Murzin. SCOP database in 2002: refinements accommodate structural genomics. Nucleic Acids Research, 30(1):264–267, 2002.
  5. Alexey G. Murzin, Steven E. Brenner, Tim Hubbord, and Cyrus Ghothia. SCOP: a structural classification of proteins database for the investigation of sequences and structures. Journal of Molecular Biology, 247(1):536–540, 1995.
  6. Khalid Raza. Application of Data Mining in Bioinformatics. Indian Journal of Computer Science and Engineering, 1(2):114–118, 2010.
  7. J. C. Setubal and J. Meidanis. Introduction to Computational Molecular Biology. PWS Publishing Company, 1997.
Index Terms

Computer Science
Information Sciences

Keywords

Bioinformatics Tools Protein Sequence Analysis Frequent Itemsets