International Journal of Computer Applications |
Foundation of Computer Science (FCS), NY, USA |
Volume 86 - Number 13 |
Year of Publication: 2014 |
Authors: Nirmal Rajah. R, L. Rufus Auxilia |
10.5120/15044-3406 |
Nirmal Rajah. R, L. Rufus Auxilia . Insilico Studies on HA 33 Subunit of Haemagglutinin of Clostridium botulinum – Construction of Three Dimensional Model and Validation. International Journal of Computer Applications. 86, 13 ( January 2014), 15-19. DOI=10.5120/15044-3406
Botulinum neurotoxin (BoNT) complexes consist of neurotoxin and neurotoxin-associated proteins. The Clostridia releases these as protein aggregate, termed as the progenitor toxins. Heamagglutin – 33 (HA-33) plays an essential role in the agglutination activity of the botulinum progenitor toxin; it assists in binding and translocating the progenitor toxins through the alimentary epithelial barriers. A three-dimensional homology model of HA-33 is demonstrated in this paper based upon the crystal structure of HA1 subcomponent of botulinum type C progenitor toxin complexed with galactose. The three dimensional model was designed using MODELLER (9v11) a comparative modelling tool that built a model based on an alignment of a sequence of HA-33 based on the known structure of botulinum type C progenitor toxin complexed with N-acetylgalactosamine. The modelled structure was then evaluated using SAVES. The structural dynamics of the modelled protein was performed by elNemo and based on the scores obtained, it was found to be a reliable and accurate three dimensional structure of the Hemeagglutin component. It gives an idea about the three dimensional structure of a protein which will would serve as a guide to a detailed understanding of its participation in the process of agglutination. This could also aid in molecular drug designing against botulism.