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A Study of Functional Genomics for Unknown Proteins in Chlamydomonas reinhardtii

by Manisha D. Giripunje, Abhay B. Fulke, Pravin U. Meshram
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International Journal of Computer Applications
Foundation of Computer Science (FCS), NY, USA
Volume 81 - Number 10
Year of Publication: 2013
Authors: Manisha D. Giripunje, Abhay B. Fulke, Pravin U. Meshram
10.5120/14045-1710

Manisha D. Giripunje, Abhay B. Fulke, Pravin U. Meshram . A Study of Functional Genomics for Unknown Proteins in Chlamydomonas reinhardtii. International Journal of Computer Applications. 81, 10 ( November 2013), 1-6. DOI=10.5120/14045-1710

@article{ 10.5120/14045-1710,
author = { Manisha D. Giripunje, Abhay B. Fulke, Pravin U. Meshram },
title = { A Study of Functional Genomics for Unknown Proteins in Chlamydomonas reinhardtii },
journal = { International Journal of Computer Applications },
issue_date = { November 2013 },
volume = { 81 },
number = { 10 },
month = { November },
year = { 2013 },
issn = { 0975-8887 },
pages = { 1-6 },
numpages = {9},
url = { https://ijcaonline.org/archives/volume81/number10/14045-1710/ },
doi = { 10.5120/14045-1710 },
publisher = {Foundation of Computer Science (FCS), NY, USA},
address = {New York, USA}
}
%0 Journal Article
%1 2024-02-06T21:55:41.276041+05:30
%A Manisha D. Giripunje
%A Abhay B. Fulke
%A Pravin U. Meshram
%T A Study of Functional Genomics for Unknown Proteins in Chlamydomonas reinhardtii
%J International Journal of Computer Applications
%@ 0975-8887
%V 81
%N 10
%P 1-6
%D 2013
%I Foundation of Computer Science (FCS), NY, USA
Abstract

Chlamydomonas reinhardtii is a unicellular green alga, which has been used as a reference organism for identifying proteins. Five hundred hypothetical proteins in Chlamydomonas reinhardtii have been sequenced for knowing functions of the proteins in their families. Functions of Five hundred hypothetical proteins in Chlamydomonas reinhardtii were predicted using bioinformatics web tools. The web tools like CDD-BLAST, INTERPROSCAN and PFAM were used for the prediction of functions in the proteins by searching protein databases for the presence of conserved domains. The current study was useful in better knowing the functions of hypothetical proteins in Chlamydomonas reinhardtii and the various regulatory mechanisms, which interact to yield a final output from the system.

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Index Terms

Computer Science
Information Sciences

Keywords

Chlamydomonas reinhardtii Bioinformatics Web Tools hypothetical proteins Conserved Domains

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