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Survey of Compression of DNA Sequence

by Dhajvir Singh Rai, R. K. Bharti, Bhawana Parihar
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International Journal of Computer Applications
Foundation of Computer Science (FCS), NY, USA
Volume 73 - Number 6
Year of Publication: 2013
Authors: Dhajvir Singh Rai, R. K. Bharti, Bhawana Parihar
10.5120/12749-9672

Dhajvir Singh Rai, R. K. Bharti, Bhawana Parihar . Survey of Compression of DNA Sequence. International Journal of Computer Applications. 73, 6 ( July 2013), 52-58. DOI=10.5120/12749-9672

@article{ 10.5120/12749-9672,
author = { Dhajvir Singh Rai, R. K. Bharti, Bhawana Parihar },
title = { Survey of Compression of DNA Sequence },
journal = { International Journal of Computer Applications },
issue_date = { July 2013 },
volume = { 73 },
number = { 6 },
month = { July },
year = { 2013 },
issn = { 0975-8887 },
pages = { 52-58 },
numpages = {9},
url = { https://ijcaonline.org/archives/volume73/number6/12749-9672/ },
doi = { 10.5120/12749-9672 },
publisher = {Foundation of Computer Science (FCS), NY, USA},
address = {New York, USA}
}
%0 Journal Article
%1 2024-02-06T21:39:24.269321+05:30
%A Dhajvir Singh Rai
%A R. K. Bharti
%A Bhawana Parihar
%T Survey of Compression of DNA Sequence
%J International Journal of Computer Applications
%@ 0975-8887
%V 73
%N 6
%P 52-58
%D 2013
%I Foundation of Computer Science (FCS), NY, USA
Abstract

Compression of large collections of data can lead to improvements in retrieval times by offsetting the CPU decompression costs with the cost of seeking and retrieving data from disk. In this paper, the author has study the different compression method which can compress the large DNA sequence. In this paper, authors have explored the DNA compression method that is COMRAD, which is used to compare with the dictionary based compression method i. e. LZ77, LZ78, LZW and general purpose compression method RAY. In this, authors have analyzed which one algorithm is better to compress the large collection of the DNA Sequence. Compression table and the line graph show that which compression algorithm has a better compression ratio and the compression size. It also shows that which one has better compression and decompression time.

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Index Terms

Computer Science
Information Sciences

Keywords

LZ77 LZ78 LZW RAY COMRA DNA Sequence

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