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DNA Multiple Sequence Alignment by a Hidden Markov Model and Fuzzy Levenshtein Distance based Genetic Algorithm

by Tamal Chakrabarti, Sourav Saha, Devadatta Sinha
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International Journal of Computer Applications
Foundation of Computer Science (FCS), NY, USA
Volume 73 - Number 16
Year of Publication: 2013
Authors: Tamal Chakrabarti, Sourav Saha, Devadatta Sinha
10.5120/12826-0206

Tamal Chakrabarti, Sourav Saha, Devadatta Sinha . DNA Multiple Sequence Alignment by a Hidden Markov Model and Fuzzy Levenshtein Distance based Genetic Algorithm. International Journal of Computer Applications. 73, 16 ( July 2013), 26-30. DOI=10.5120/12826-0206

@article{ 10.5120/12826-0206,
author = { Tamal Chakrabarti, Sourav Saha, Devadatta Sinha },
title = { DNA Multiple Sequence Alignment by a Hidden Markov Model and Fuzzy Levenshtein Distance based Genetic Algorithm },
journal = { International Journal of Computer Applications },
issue_date = { July 2013 },
volume = { 73 },
number = { 16 },
month = { July },
year = { 2013 },
issn = { 0975-8887 },
pages = { 26-30 },
numpages = {9},
url = { https://ijcaonline.org/archives/volume73/number16/12826-0206/ },
doi = { 10.5120/12826-0206 },
publisher = {Foundation of Computer Science (FCS), NY, USA},
address = {New York, USA}
}
%0 Journal Article
%1 2024-02-06T21:40:16.911336+05:30
%A Tamal Chakrabarti
%A Sourav Saha
%A Devadatta Sinha
%T DNA Multiple Sequence Alignment by a Hidden Markov Model and Fuzzy Levenshtein Distance based Genetic Algorithm
%J International Journal of Computer Applications
%@ 0975-8887
%V 73
%N 16
%P 26-30
%D 2013
%I Foundation of Computer Science (FCS), NY, USA
Abstract

In the last decade, biologists have experienced a fundamental shift away from the traditional empirical research to large-scale, computer-based research. Today bio-informatics is a systematic and predictive discipline which encompasses genomics, informatics, automation, and miniaturization. This fusion of biology and information science is expected to continue and expand for the foreseeable future. DNA Sequence alignment is a commonly observed problem in bio-informatics for establishing similarity and evolutionary relationship between DNA sequences. This paper has presented a DNA multiple sequence alignment technique by a genetic algorithm based on Hidden Markov Model and Fuzzy Levenshtein Distance.

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Index Terms

Computer Science
Information Sciences

Keywords

Genetic Algorithm Hidden Markov Model Fuzzy Levenshtein Distance

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