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Parallel Two Master Method to Improve BLAST Algorithm’s Performance

by Muralidhara B L
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International Journal of Computer Applications
Foundation of Computer Science (FCS), NY, USA
Volume 63 - Number 1
Year of Publication: 2013
Authors: Muralidhara B L
10.5120/10428-5097

Muralidhara B L . Parallel Two Master Method to Improve BLAST Algorithm’s Performance. International Journal of Computer Applications. 63, 1 ( February 2013), 8-14. DOI=10.5120/10428-5097

@article{ 10.5120/10428-5097,
author = { Muralidhara B L },
title = { Parallel Two Master Method to Improve BLAST Algorithm’s Performance },
journal = { International Journal of Computer Applications },
issue_date = { February 2013 },
volume = { 63 },
number = { 1 },
month = { February },
year = { 2013 },
issn = { 0975-8887 },
pages = { 8-14 },
numpages = {9},
url = { https://ijcaonline.org/archives/volume63/number1/10428-5097/ },
doi = { 10.5120/10428-5097 },
publisher = {Foundation of Computer Science (FCS), NY, USA},
address = {New York, USA}
}
%0 Journal Article
%1 2024-02-06T21:12:59.914024+05:30
%A Muralidhara B L
%T Parallel Two Master Method to Improve BLAST Algorithm’s Performance
%J International Journal of Computer Applications
%@ 0975-8887
%V 63
%N 1
%P 8-14
%D 2013
%I Foundation of Computer Science (FCS), NY, USA
Abstract

The BLAST heuristic algorithm is one of the widely used algorithms for finding similar sequences in sequence databases. The paper acquires importance as traditional approaches to sequence homology searches using BLAST have proven to be too slow to keep up with the current rate of sequence acquisition. The use of the BLAST application on a single processor has become too costly, inefficient, and time-consuming for many life science laboratories. An obvious improvement that has already been suggested is the use of database segmentation to speedup BLAST. A two master method to improve the performance of the parallel BLAST algorithm is presented here. It is found that the two master method has performed better than the single master method.

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Index Terms

Computer Science
Information Sciences

Keywords

Sequence alignment BLAST Database segment Query segment Efficiency Speedup

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