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Protein Data Representation: A Survey

by Ahmed S. Fadel, Mohamed Belal, Mostafa-sami M. Mostafa
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International Journal of Computer Applications
Foundation of Computer Science (FCS), NY, USA
Volume 56 - Number 11
Year of Publication: 2012
Authors: Ahmed S. Fadel, Mohamed Belal, Mostafa-sami M. Mostafa
10.5120/8936-3075

Ahmed S. Fadel, Mohamed Belal, Mostafa-sami M. Mostafa . Protein Data Representation: A Survey. International Journal of Computer Applications. 56, 11 ( October 2012), 22-27. DOI=10.5120/8936-3075

@article{ 10.5120/8936-3075,
author = { Ahmed S. Fadel, Mohamed Belal, Mostafa-sami M. Mostafa },
title = { Protein Data Representation: A Survey },
journal = { International Journal of Computer Applications },
issue_date = { October 2012 },
volume = { 56 },
number = { 11 },
month = { October },
year = { 2012 },
issn = { 0975-8887 },
pages = { 22-27 },
numpages = {9},
url = { https://ijcaonline.org/archives/volume56/number11/8936-3075/ },
doi = { 10.5120/8936-3075 },
publisher = {Foundation of Computer Science (FCS), NY, USA},
address = {New York, USA}
}
%0 Journal Article
%1 2024-02-06T20:58:34.957851+05:30
%A Ahmed S. Fadel
%A Mohamed Belal
%A Mostafa-sami M. Mostafa
%T Protein Data Representation: A Survey
%J International Journal of Computer Applications
%@ 0975-8887
%V 56
%N 11
%P 22-27
%D 2012
%I Foundation of Computer Science (FCS), NY, USA
Abstract

One of the critical issues in bioinformatics is the data structure used for representing the protein data; this representation is a base for the operations applied such as sequence alignment, structure alignment and motif finding. In this paper, a survey of different representations and well-known data structures used for protein data is presented from a computer science perspective. This work presents a survey and summarizes the efforts done for protein data representation and approximation. Hence, it could be a basic reference for research that is aiming to develop applications in the field of bioinformatics.

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Index Terms

Computer Science
Information Sciences

Keywords

Protein representation Protein structure Data structure Data reduction Protein structure approximation

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