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A Genetic Algorithm based Fuzzy C Mean Clustering Model for Segmenting Microarray Images

by Biju V G, Mythili P
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International Journal of Computer Applications
Foundation of Computer Science (FCS), NY, USA
Volume 52 - Number 11
Year of Publication: 2012
Authors: Biju V G, Mythili P
10.5120/8250-1766

Biju V G, Mythili P . A Genetic Algorithm based Fuzzy C Mean Clustering Model for Segmenting Microarray Images. International Journal of Computer Applications. 52, 11 ( August 2012), 42-48. DOI=10.5120/8250-1766

@article{ 10.5120/8250-1766,
author = { Biju V G, Mythili P },
title = { A Genetic Algorithm based Fuzzy C Mean Clustering Model for Segmenting Microarray Images },
journal = { International Journal of Computer Applications },
issue_date = { August 2012 },
volume = { 52 },
number = { 11 },
month = { August },
year = { 2012 },
issn = { 0975-8887 },
pages = { 42-48 },
numpages = {9},
url = { https://ijcaonline.org/archives/volume52/number11/8250-1766/ },
doi = { 10.5120/8250-1766 },
publisher = {Foundation of Computer Science (FCS), NY, USA},
address = {New York, USA}
}
%0 Journal Article
%1 2024-02-06T20:52:01.925287+05:30
%A Biju V G
%A Mythili P
%T A Genetic Algorithm based Fuzzy C Mean Clustering Model for Segmenting Microarray Images
%J International Journal of Computer Applications
%@ 0975-8887
%V 52
%N 11
%P 42-48
%D 2012
%I Foundation of Computer Science (FCS), NY, USA
Abstract

Genetic algorithm based Fuzzy C Mean (GAFCM) technique is used to segment spots of complimentary DNA (c-DNA) microarray images for finding gene expression is proposed in this paper. To evaluate the performance of the algorithm, simulated microarray slides were generated whose actual mean values were known and is used for testing. K-means, Fuzzy C Means (FCM) and the proposed GAFCM algorithm were applied to the simulated images for the separation of the foreground (FG) spot signal information from background (BG) and the results were compared. The strength of the algorithm was tested by evaluating the segmentation matching factor, coefficient of determination, concordance correlation and gene expression values. From the results it is observed that the segmentation ability of GAFCM is better compared to FCM and K- Means algorithms.

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Index Terms

Computer Science
Information Sciences

Keywords

K-means FCM GAFCM Genetic Algorithm Segmentation Gene expression

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