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Article:Semantic Grid for Biomedical Ontologies

by Farhan Shafiq, Sheikh Kashif Raffat, Muhammad Shahab Siddiqui
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International Journal of Computer Applications
Foundation of Computer Science (FCS), NY, USA
Volume 23 - Number 5
Year of Publication: 2011
Authors: Farhan Shafiq, Sheikh Kashif Raffat, Muhammad Shahab Siddiqui
10.5120/2887-3765

Farhan Shafiq, Sheikh Kashif Raffat, Muhammad Shahab Siddiqui . Article:Semantic Grid for Biomedical Ontologies. International Journal of Computer Applications. 23, 5 ( June 2011), 1-4. DOI=10.5120/2887-3765

@article{ 10.5120/2887-3765,
author = { Farhan Shafiq, Sheikh Kashif Raffat, Muhammad Shahab Siddiqui },
title = { Article:Semantic Grid for Biomedical Ontologies },
journal = { International Journal of Computer Applications },
issue_date = { June 2011 },
volume = { 23 },
number = { 5 },
month = { June },
year = { 2011 },
issn = { 0975-8887 },
pages = { 1-4 },
numpages = {9},
url = { https://ijcaonline.org/archives/volume23/number5/2887-3765/ },
doi = { 10.5120/2887-3765 },
publisher = {Foundation of Computer Science (FCS), NY, USA},
address = {New York, USA}
}
%0 Journal Article
%1 2024-02-06T20:09:21.994129+05:30
%A Farhan Shafiq
%A Sheikh Kashif Raffat
%A Muhammad Shahab Siddiqui
%T Article:Semantic Grid for Biomedical Ontologies
%J International Journal of Computer Applications
%@ 0975-8887
%V 23
%N 5
%P 1-4
%D 2011
%I Foundation of Computer Science (FCS), NY, USA
Abstract

The biomedical ontologies contain the complex distributed heterogeneous data, to analyze and process this data is the big challenge for biomedical communities. The common goal of biomedical communities is to annotate this data. These problems generated a need to use the services of grid on semantic web. Semantic Grid is the integration of Grid with the Semantic web, which will play the vital role in future web. The semantic grid architecture provides semantic and knowledge support. In this paper we discuss two biomedical ontologies, Biological Viruses Community Ontology (BVCO) and the most mature Gene Ontology (GO).

References
  1. I. Foster and C. Kesselman, “The Grid: Blueprint for a New Computing Infrastructure”, Morgan Kaufmann, 1998.
  2. I. Foster, C. Kesselman and S. Tuecke, “The Anatomy of the Grid: Enabling Scalable Virtual Organizations”, International Journal of Supercomputer Applications, 15(3), 2001.
  3. J. Joseph and C. Fellenstein, “Grid computing”, PHI, PTR, Page 48, Jan 2004,
  4. T. Gruber, “Ontology,” Entry in the Encyclopedia of Database Systems, Ling Liu and M. Tomer Ozsu (Eds.), Springer-Verlag, 2008.
  5. N. Islam, M.S. Siddiqui and Z.A. Shaikh, “TODE–A Dot Net Based Tool for Ontology Development and Editing”, Proceedings of 2010 2nd International Conference on Computer Engineering and Technology (ICCET 2010), International Convention Centre of UESTC, Chengdu, China, 6, Pages 229-233, April 16 - 18, 2010.
  6. G. Napolitano, A. Gonzáles Beltrán, C. Fox, A. Marshall, A. Finkelstein and P. McCarron, "Biomedical Ontologies and Grid Computing as New Resources for Cancer Registries", Proceedings of the International Conference on Health Informatics 2009, Porto, Portugal.
  7. M. Hadzic and E. Chang, “Grid Services Complemented by Domain Ontology Supporting Biomedical Community”, Proceedings of SAG'2004. pp.86~98.
  8. J. Khan, F. Shafiq and M. K. Khan, “A Statistical Approach for the Assessment of QOS and Performance in Grid Computing Environment”, International Journal of Computer Applications, 19(3), 2011.
  9. M. Geldof, “The Semantic Grid: will Semantic Web and Grid go hand in hand?”, European Commission DG Information Society Unit "Grid technologies" June 2004.
  10. S. Chakraborty and R. Mittal, “Semantic Web Technology: A Strategic Approach to Intelligence”, International Journal of Computer Applications, 5(9), 2010.
  11. H. Stork, “Webs, Grids and Knowledge Spaces- Programmes, Projects and Prospects”, Journal of Universal Computer Science, 8(9), 2002.
  12. C. Goble, D. Kuo, I. Kotsiopoulos, O. Corcho, P. Alper, and S. Bechhofer, "Towards a Semantic Grid Architecture," in CoreGrid workshop on Knowledge and Data Management in Grids, 2005.
  13. S. Adcock, “How does the grid extend the internet, and what is the future vision for this development?”, 2000 http://mms.ecs.soton.ac.uk/papers/27.pdf
  14. A. Maedche, and S. Staab, “Ontology Learning for the Semantic Web,” The Semantic Web, IEEE Intelligent Systems, 72-79, 2001.
  15. J. Hendler, “Agents and the Semantic Web,” The Semantic Web, IEEE Intelligent Systems, 30-37, 2001.
  16. “A Semantic Grid Browser for the Life Sciences Applied to the Study of Infectious Diseases”, http://www.nettab.org/ 2006/Sessions/Burger.pdf
  17. B. Smith, M. Ashburner, C. Rosse, J. Bard, W. Bug, W. Ceusters, L.J. Goldberg, K. Eilbeck, A. Ireland, C.J. Mungall et al. “The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration,” Nature Biotechnology 25, 2007, doi:10.1038/nbt1346.
  18. J. Day-Richter, M.A. Harris, M. Haendel, The Gene Ontology OBO-Edit Working Group and S. Lewis, “OBO-Edit—an ontology editor for biologists,” Bioinformatics 32, Pages 2198–2200, 2007, doi:10.1093.
  19. N.F, Noy and D.L. McGuinness, “Ontology Development 101: A guide to creating your first ontology,” Stanford Knowledge Systems Laboratory Technical Report 2001, KSL-01-05, Stanford University, USA.
  20. S.K. Raffat, M.S. Siddiqui, Z.A. Shaikh and A.R. Memon, “Towards the development of Biological Viruses Community Ontology (BVCO)”, Journal of Computing, 3(4), 2011.
  21. M.S. Siddiqui, Z.A. Shaikh and A.R. Memon, “Towards the development of community ontology,” Proceedings of the 12th IEEE International Multi-topic Conference (INMIC) 2008, Bahria University, Karachi, Pakistan, Pages 357-360, December 23-24.
  22. The Gene Ontology Consortium, “The Gene Ontology in 2010,” Nucleic Acids Research 38, 2010, doi: 10.1093/nar/gkp1018, D331–D335.
  23. The Gene Ontology Consortium, “The Gene Ontology project in 2008,” Nucleic Acids Research 36, 2008, doi: 10.1093/nar/gkm883.
Index Terms

Computer Science
Information Sciences

Keywords

Biomedical Ontology Grid Computing Semantic Grid Semantic Web

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