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Higher Compression from Burrows-Wheeler Transform for DNA Sequence

by Rexline S. J., Aju Richard Gerard, Trujilla Lobo F.
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International Journal of Computer Applications
Foundation of Computer Science (FCS), NY, USA
Volume 173 - Number 3
Year of Publication: 2017
Authors: Rexline S. J., Aju Richard Gerard, Trujilla Lobo F.
10.5120/ijca2017915261

Rexline S. J., Aju Richard Gerard, Trujilla Lobo F. . Higher Compression from Burrows-Wheeler Transform for DNA Sequence. International Journal of Computer Applications. 173, 3 ( Sep 2017), 11-15. DOI=10.5120/ijca2017915261

@article{ 10.5120/ijca2017915261,
author = { Rexline S. J., Aju Richard Gerard, Trujilla Lobo F. },
title = { Higher Compression from Burrows-Wheeler Transform for DNA Sequence },
journal = { International Journal of Computer Applications },
issue_date = { Sep 2017 },
volume = { 173 },
number = { 3 },
month = { Sep },
year = { 2017 },
issn = { 0975-8887 },
pages = { 11-15 },
numpages = {9},
url = { https://ijcaonline.org/archives/volume173/number3/28313-2017915261/ },
doi = { 10.5120/ijca2017915261 },
publisher = {Foundation of Computer Science (FCS), NY, USA},
address = {New York, USA}
}
%0 Journal Article
%1 2024-02-07T00:20:14.839530+05:30
%A Rexline S. J.
%A Aju Richard Gerard
%A Trujilla Lobo F.
%T Higher Compression from Burrows-Wheeler Transform for DNA Sequence
%J International Journal of Computer Applications
%@ 0975-8887
%V 173
%N 3
%P 11-15
%D 2017
%I Foundation of Computer Science (FCS), NY, USA
Abstract

Large amount of space is required to store biological sequences in DNA database like GenBank sequence database. The data storage for biological sequences has become very essential in today’s current situation. Standard compression algorithms are not competent enough to compress biological sequences. In recent times, special algorithms have been introduced specifically for the purpose of compressing the biological sequences like DNA and protein sequences. In this paper, the Burrows-Wheeler Transform (BWT) based approaches are explored to compress the biological sequences. In comparison with the existing general purpose compression algorithms, the proposed BWT based method compresses these types of sequences better and at the same time the cost of Burrows-Wheeler Transform is almost insignificant.

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Index Terms

Computer Science
Information Sciences

Keywords

DNA sequence compression Burrows-Wheeler Transform BWT and genome.

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