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Design of 2D Genome Visualization Tool for DNA Sequence Analysis

by Ankita Tripathi, Santosh Mishra
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International Journal of Computer Applications
Foundation of Computer Science (FCS), NY, USA
Volume 163 - Number 5
Year of Publication: 2017
Authors: Ankita Tripathi, Santosh Mishra
10.5120/ijca2017913525

Ankita Tripathi, Santosh Mishra . Design of 2D Genome Visualization Tool for DNA Sequence Analysis. International Journal of Computer Applications. 163, 5 ( Apr 2017), 16-19. DOI=10.5120/ijca2017913525

@article{ 10.5120/ijca2017913525,
author = { Ankita Tripathi, Santosh Mishra },
title = { Design of 2D Genome Visualization Tool for DNA Sequence Analysis },
journal = { International Journal of Computer Applications },
issue_date = { Apr 2017 },
volume = { 163 },
number = { 5 },
month = { Apr },
year = { 2017 },
issn = { 0975-8887 },
pages = { 16-19 },
numpages = {9},
url = { https://ijcaonline.org/archives/volume163/number5/27391-2017913525/ },
doi = { 10.5120/ijca2017913525 },
publisher = {Foundation of Computer Science (FCS), NY, USA},
address = {New York, USA}
}
%0 Journal Article
%1 2024-02-07T00:09:21.074689+05:30
%A Ankita Tripathi
%A Santosh Mishra
%T Design of 2D Genome Visualization Tool for DNA Sequence Analysis
%J International Journal of Computer Applications
%@ 0975-8887
%V 163
%N 5
%P 16-19
%D 2017
%I Foundation of Computer Science (FCS), NY, USA
Abstract

In this paper sequencing of genomic data requires methods to allow this data to be visualized and analyzed. With the emergence of genomic signal processing, graphical representation techniques play a key role in applying digital signal processing techniques like Fourier transforms, and more recently, wavelet transform for visualizing DNA sequence.[2] The choice of the graphical representation technique for a DNA sequence affects how well its biological properties can be reflected in the graphical domain for visualization and analysis of the characteristics of special regions of interest within the DNA sequence. This paper presents a summary of various DNA graphical representation methods and their applications in envisaging and analyzing long DNA sequences. [1] [2]

References
  1. . Damian Panasa, Piotr Waz, Dorota Bieli, Ashesh Nandy, Subhash C. Basak “2D–Dynamic Representation of DNA/RNA Sequences as a Characterization Tool of the Zika Virus Genome”, MATCH Commun. Math. Comput. Chem. 77 (2016) 321-332.
  2. . D. Bielinska-Waz and P. Waz, “2D-dynamic Representation of DNA Sequences as Graphical Tool in Bioinformatics”, AIP Conference Proceedings 1773, 060004 (2016).
  3. . Sai Zou, Lei Wang and Junfeng Wang, “A 2D graphical representation of the sequencesof DNA based on triplets and its applications” , EURASIP Journal on Bioinformatics and Systems Biology 2014.
  4. . Lei Wang,1,2 Hui Peng,1,2 and Jinhua Zheng1, “ADLD: A Novel Graphical Representation of Protein Sequences and Its Application” , Hindawi Publishing Corporation Computational and Mathematical Methods in Medicine Volume 2014, Article ID 959753.
  5. . Chiou-Yi Hor, Chang-Biau Yang, Chia-Hung Chang, Chiou-Ting Tseng and Hung-Hsin Chen, “A Tool Preference Choice Method for RNA Secondary Structure Prediction by SVM with Statistical Tests”, Evolutionary Bioinformatics 2013:9 163–184.
  6. . Dorota Bielinska Waz, Timothy Clark , Piotr Waz, Wiesław Nowak, Ashesh Nandy “2D-dynamic representation of DNA sequences”, Chemical Physics Letters 442, pp. 140–144, 2011
  7. .Jinglu Hu, Yang Chen , “Accurate Reconstruction for DNA Sequencing by Hybridization Based on a Constructive Heuristic”, IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) July 2011
  8. .Yi-Ming Sun, Wei-Li Liao, Hsien-Da Huang, Baw-Jhiune Liu, Cheng-Wei Chang, Jorng-Tzong Horng, Li-Ching Wu, “A Human DNA Methylation Site Predictor Based on SVM” , Bioinformatic and Bioengineering, IEEE International Symposium, 2009
  9. . Jing Yang, Zhi-xiang Yin, Kai-feng Huang, “The Working Operation Problem on Triple-stranded DNA Structure Model”, 2009
  10. . Designation of the two strands of DNA JCBN/NC-IUB Newsletter 1989, Accessed 07 May 2008
Index Terms

Computer Science
Information Sciences

Keywords

Genomes Nucleotides DNA sequence Biology

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