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An Algorithmic Framework for the Study of Behavior of siRNA Sequences

by Shailendra Singh, Amardeep Singh
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International Journal of Computer Applications
Foundation of Computer Science (FCS), NY, USA
Volume 13 - Number 7
Year of Publication: 2011
Authors: Shailendra Singh, Amardeep Singh
10.5120/1792-2480

Shailendra Singh, Amardeep Singh . An Algorithmic Framework for the Study of Behavior of siRNA Sequences. International Journal of Computer Applications. 13, 7 ( January 2011), 28-32. DOI=10.5120/1792-2480

@article{ 10.5120/1792-2480,
author = { Shailendra Singh, Amardeep Singh },
title = { An Algorithmic Framework for the Study of Behavior of siRNA Sequences },
journal = { International Journal of Computer Applications },
issue_date = { January 2011 },
volume = { 13 },
number = { 7 },
month = { January },
year = { 2011 },
issn = { 0975-8887 },
pages = { 28-32 },
numpages = {9},
url = { https://ijcaonline.org/archives/volume13/number7/1792-2480/ },
doi = { 10.5120/1792-2480 },
publisher = {Foundation of Computer Science (FCS), NY, USA},
address = {New York, USA}
}
%0 Journal Article
%1 2024-02-06T20:02:06.154879+05:30
%A Shailendra Singh
%A Amardeep Singh
%T An Algorithmic Framework for the Study of Behavior of siRNA Sequences
%J International Journal of Computer Applications
%@ 0975-8887
%V 13
%N 7
%P 28-32
%D 2011
%I Foundation of Computer Science (FCS), NY, USA
Abstract

The study about biological sequences is gaining momentum nowadays. An increasing number of researchers have proposed framework for the implementation of various algorithms for biomolecules sequence alignment and secondary structure prediction. A comparative study can also enhance the results but alignment and prediction algorithms vary widely in terms of both sensitivity and selectivity across different lengths and homologies. The independent benchmarking of these algorithms is rarely performed for siRNA sequences. Sequence alignment and determination of the secondary structure of biomolecules are very important for understanding their functions and behavior. This paper presents the implementation of Nussinov algorithm using Bio-Perl for the study of behavior of siRNA sequences.

References
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Index Terms

Computer Science
Information Sciences

Keywords

Sequences siRNA Nussinov Algorithm Bio-Perl

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